Keto tuna zoodle casserole brings the creamy comfort of tuna noodle bake into the Keto recipe collection with zucchini noodles, green chiles, cheddar, and a sauce that bakes bubbly instead of watery. The moisture control matters most: salt the zoodles, squeeze them hard, then fold them into the tuna filling only after the sauce is ready. Nutrition estimates are calculated from ingredient weights using USDA FoodData Central, and you can browse more low-carb dinner ideas in the Recipes archive.
Table of Contents
Why this recipe works
- Dry zoodles protect the sauce. Salting and squeezing the zucchini before baking removes the water that usually turns a casserole loose at the bottom.
- Green chiles add flavor without many carbs. They bring gentle heat, acidity, and Southwestern warmth while keeping the total carb load friendly for keto portions.
- Cream cheese binds without flour. A small block melts into the mayonnaise and cheddar, so the casserole sets without cornstarch, breadcrumbs, or canned soup.
- It is pantry-flexible. Canned tuna, jarred or canned chiles, and one baking dish make this practical when fresh protein is not planned.

Ingredients
Makes 6 servings.
Equipment
How to make it
- Drain the zucchini. Toss the zucchini noodles with 3/4 teaspoon of the salt and set them in a colander for 15 minutes. Wrap them in a towel and squeeze until the towel feels damp but the zoodles no longer drip.
- Start the base. Heat the oven to 400°F (205°C). Warm the olive oil in a large skillet over medium heat, then cook the onion and celery for 4 minutes, until glossy and just softened. Add the garlic and cook for 30 seconds.
- Melt the sauce. Lower the heat. Stir in the green chiles, tuna, cream cheese, mayonnaise, mustard, garlic powder, black pepper, and the remaining 1/4 teaspoon salt until the cream cheese softens and coats the tuna in a thick sauce.
- Fold in the zoodles. Add the squeezed zucchini noodles and half of the cheddar. Toss gently for 1 to 2 minutes, just until the strands are coated; stop before the zucchini turns limp.
- Bake until bubbling. Scrape the mixture into the baking dish, level the top, and scatter over the remaining cheddar. Bake for 15 to 18 minutes, until the edges bubble and the cheese has small golden spots.
- Rest and finish. Let the casserole stand for 8 minutes so the sauce settles around the zoodles. Sprinkle with chives and spoon into warm bowls.

Practical cooking tips
- Squeeze harder than seems polite. The most common failure in a low carb tuna casserole is watery zucchini; a firm towel squeeze fixes more than extra baking time.
- Use block cream cheese. Tub-style whipped cream cheese has extra air and can loosen the sauce once heated.
- Drain tuna well. Press the lid into the can or use a sieve, because tuna liquid dilutes the green chile sauce.
- Keep the bake short. The filling is already cooked through; the oven step melts cheese, heats the center, and lightly browns the top.
- Try a related zoodle dinner. For a stovetop seafood option, the Keto Mediterranean Shrimp Zoodles recipe keeps the same low-carb noodle idea without a casserole dish.
Swaps and variations
- Make it a green chile tuna casserole with more heat. Add minced jalapeño or a pinch of chipotle powder; carbs barely move, but sodium may rise if the chiles are canned.
- Turn it into a zucchini noodle tuna bake with more protein. Add another 5-ounce can of drained tuna; each serving gains about 5 grams of protein and very little carbohydrate.
- Use Monterey Jack instead of cheddar. The fat stays similar, the flavor turns milder, and the top melts more smoothly.
- Make a sharper keto tuna casserole. Swap 2 tablespoons of cheddar for grated Parmesan; total carbs stay nearly the same and the top tastes saltier.
- Keep the tuna zoodle bake dairy-lighter. Reduce cheddar by half and add 2 tablespoons more mayonnaise; fat remains high, but the casserole will be softer.
Storage and meal prep
Cool the casserole, portion it into shallow containers, and refrigerate within 2 hours. Keep leftovers in the refrigerator for 3 to 4 days, following USDA leftover guidance, or freeze tightly wrapped portions for 2 to 3 months for best casserole quality. Reheat covered in a 325°F (165°C) oven or in short microwave bursts until hot; the zoodles soften after freezing, so the best texture is from refrigerated meal prep.
Nutrition per serving
| Nutrient | Per serving |
|---|---|
| Calories | 354 kcal |
| Protein | 18 g |
| Fat | 27 g |
| Total carbs | 9 g |
| Fiber | 2 g |
| Net carbs | 7 g |
Nutrition is an estimate and varies with brands and exact portion sizes. The sidebar carb value is total carbs; net carbs subtract fiber from that number.

Frequently asked questions
Can I make keto tuna zoodle casserole ahead?
Yes, assemble it up to one day ahead, cover, and refrigerate before baking. Add 3 to 5 minutes to the oven time if it goes in cold.
How do I keep zucchini noodles from making the casserole watery?
Salt, drain, and squeeze them before they touch the sauce. Baking longer after the casserole turns watery usually overcooks the tuna and still leaves liquid underneath.
Can I use tuna packed in oil?
Yes, but drain it very well and expect a richer result. Oil-packed tuna raises fat and calories compared with the water-packed tuna used for the nutrition estimate.
Is this low carb tuna casserole freezer friendly?
It can be frozen, but the texture is better from the refrigerator. Zucchini noodles release more moisture after freezing, so thaw overnight and reheat uncovered for the last few minutes.
Can I make it without mayonnaise?
Yes, use sour cream or thick Greek yogurt if that fits your macros. The sauce will taste tangier and may contain a few more carbs depending on the brand.
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